Storing a coverage in a JDBC database¶

Introduction¶

This tutorial describes the process of storing a coverage along with its pyramids in a jdbc database. The ImageMosaic JDBC plugin is authored by Christian Mueller and is part of the geotools library.

The full documentation is available here:http://docs.geotools.org/latest/userguide/library/coverage/jdbc/index.html

This tutorial will show one possible scenario, explaining step by step what to do for using this module in GeoServer (since Version 1.7.2)

Getting Started¶

We use postgis/postgres as database engine, a database named “gis” and start with an image from openstreetmap. We also need this utility http://www.gdal.org/gdal_retile.html . The best way to install with all dependencies is downloading from here http://fwtools.maptools.org/

Create a working directory, lets call it working ,download this image with a right mouse click (Image save as ...) and save it as start_rgb.png

Check your image with:

gdalinfo start_rgb.png

This image has 4 Bands (Red,Green,Blue,Alpha) and needs much memory. As a rule, it is better to use images with a color table. We can transform with rgb2pct (rgb2pct.py on Unix).:

rgb2pct -of png start_rgb.png start.png

Compare the sizes of the 2 files.

Afterwards, create a world file start.wld in the working directory with the following content.:

0.0075471698
0.0000000000
0.0000000000
-0.0051020408
8.9999995849
48.9999999796

Preparing the pyramids and the tiles¶

If you are new to tiles and pyramids, take a quick look here http://star.pst.qub.ac.uk/idl/Image_Tiling.html

How many pyramids are needed ?¶

Lets do a simple example. Given an image with 1024x1024 pixels and a tile size with 256x256 pixels.We can calculate in our brain that we need 16 tiles. Each pyramid reduces the number of tiles by a factor of 4. The first pyramid has 16/4 = 4 tiles, the second pyramid has only 4/4 = 1 tile.

Solution: The second pyramid fits on one tile, we are finished and we need 2 pyramids.

The formula for this:

number of pyramids = log(pixelsize of image) / log(2) - log (pixelsize of tile) / log(2).

Try it: Go to Google and enter as search term “log(1024)/log(2) - log(256)/log(2)” and look at the result.

If your image is 16384 pixels , and your tile size is 512 pixels, it is

log(16384)/log(2) - log(512)/log(2) = 5

If your image is 18000 pixels, the result = 5.13570929. Thake the floor and use 5 pyramids. Remember, the last pyramid reduces 4 tiles to 1 tile, so this pyramid is not important.

If your image is 18000x12000 pixel, use the bigger dimension (18000) for the formula.

For creating pyramids and tiles, use http://www.gdal.org/gdal_retile.html from the gdal project.

The executeable for Windows users is gdal_retile.bat or only gdal_retile, Unix users call gdal_retile.py

Create a subdirectory tiles in your working directory and execute within the working directory:

gdal_retile -co "WORLDFILE=YES"  -r bilinear -ps 128 128 -of PNG -levels 2 -targetDir tiles start.png

What is happening ? We tell gdal_retile to create world files for our tiles (-co “WORLDFILE=YES”), use bilinear interpolation (-r bilinear), the tiles are 128x128 pixels in size (-ps 128 128) , the image format should be PNG (-of PNG), we need 2 pyramid levels (-levels 2) ,the directory for the result is tiles (-targetDir tiles) and the source image is start.png.

Now you should have the following directories

• working containing start.png , start.wld and a subdirectory tiles.
• working/tiles containing many *.png files and associated *.wld files representing the tiles of start.png
• working/tiles/1 containing many *.png files and associated *.wld files representing the tiles of the first pyramid
• working/tiles/2 containing many *.png files and associated *.wld files representing the tiles of the second pyramid

Configuring the new map¶

The configuration for a map is done in a xml file. This file has 3 main parts.

1. The connect info for the jdbc driver
2. The mapping info for the sql tables
3. Configuration data for the map

Since the jdbc connect info and the sql mapping may be reused by more than one map, the best practice is to create xml fragments for both of them and to use xml entity references to include them into the map xml.

First, find the location of the GEOSERVER_DATA_DIR. This info is contained in the log file when starting GeoServer.:

----------------------------------
- GEOSERVER_DATA_DIR: /home/mcr/geoserver-1.7.x/1.7.x/data/release
----------------------------------

Put all configuration files into the coverages subdirectory of your GeoServer data directory. The location in this example is

/home/mcr/geoserver-1.7.x/1.7.x/data/release/coverages

1. Create a file connect.postgis.xml.inc with the following content

<connect>
  <!-- value DBCP or JNDI -->
  <dstype value="DBCP"/>
  <!--   <jndiReferenceName value=""/>  -->
  <username value="postgres" />
  <password value="postgres" />
  <jdbcUrl value="jdbc:postgresql://localhost:5432/gis" />
  <driverClassName value="org.postgresql.Driver"/>
  <maxActive value="10"/>
  <maxIdle value="0"/>
</connect>

The jdbc user is “postgres”, the password is “postgres”, maxActive and maxIdle are parameters of the apache connection pooling, jdbcUrl and driverClassName are postgres specific. The name of the database is “gis”.

If you deploy GeoServer into a J2EE container capable of handling jdbc data sources, a better approach is

<connect>
  <!-- value DBCP or JNDI -->
  <dstype value="JNDI"/>
  <jndiReferenceName value="jdbc/mydatasource"/>
</connect>

For this tutorial, we do not use data sources provided by a J2EE container.

2. The next xml fragment to create is mapping.postgis.xml.inc

<!-- possible values: universal,postgis,db2,mysql,oracle -->
<spatialExtension name="postgis"/>
<mapping>
    <masterTable name="mosaic" >
      <coverageNameAttribute name="name"/>
      <maxXAttribute name="maxX"/>
      <maxYAttribute name="maxY"/>
      <minXAttribute name="minX"/>
      <minYAttribute name="minY"/>
      <resXAttribute name="resX"/>
      <resYAttribute name="resY"/>
      <tileTableNameAtribute  name="TileTable" />
      <spatialTableNameAtribute name="SpatialTable" />
    </masterTable>
    <tileTable>
      <blobAttributeName name="data" />
      <keyAttributeName name="location" />
    </tileTable>
    <spatialTable>
      <keyAttributeName name="location" />
      <geomAttributeName name="geom" />
      <tileMaxXAttribute name="maxX"/>
      <tileMaxYAttribute name="maxY"/>
      <tileMinXAttribute name="minX"/>
      <tileMinYAttribute name="minY"/>
    </spatialTable>
</mapping>

The first element <spatialExtension> specifies which spatial extension the module should use. “universal” means that there is no spatial db extension at all, meaning the tile grid is not stored as a geometry, using simple double values instead.

This xml fragment describes 3 tables, first we need a master table where information for each pyramid level is saved. Second and third, the attribute mappings for storing image data, envelopes and tile names are specified. To keep this tutorial simple, we will not further discuss these xml elements. After creating the sql tables things will become clear.

3. Create the configuration xml osm.postgis.xml for the map (osm for “open street map”)

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE ImageMosaicJDBCConfig [
  <!ENTITY mapping PUBLIC "mapping"  "mapping.postgis.xml.inc">
  <!ENTITY connect PUBLIC "connect"  "connect.postgis.xml.inc">]>
<config version="1.0">
  <coverageName name="osm"/>
  <coordsys name="EPSG:4326"/>
  <!-- interpolation 1 = nearest neighbour, 2 = bilinear, 3 = bicubic -->
  <scaleop  interpolation="1"/>
  <verify cardinality="false"/>
  &mapping;
  &connect;
</config>

This is the final xml configuration file, including our mapping and connect xml fragment. The coverage name is “osm”, CRS is EPSG:4326. <verify cardinality="false"> means no check if the number of tiles equals the number of rectangles stored in the db. (could be time consuming in case of large tile sets).

This configuration is the hard stuff, now, life becomes easier :-)

Using the java ddl generation utility¶

The full documentation is here: http://docs.geotools.org/latest/userguide/library/coverage/jdbc/ddl.html

To create the proper sql tables, we can use the java ddl generation utility. This utility is included in the gt-imagemosaic-jdbc-version.jar. Assure that this jar file is in your WEB-INF/lib directory of your GeoServer installation.

Change to your working directory and do a first test:

java -jar <your_geoserver_install_dir>/webapps/geoserver/WEB-INF/lib/gt-imagemosaic-jdbc-{version}.jar

The reply should be:

Missing cmd import | ddl

Create a subdirectory sqlscripts in your working directory. Within the working directory, execute:

java -jar <your_geoserver_install_dir>/webapps/geoserver/WEB-INF/lib/gt-imagemosaic-jdbc-{version}.jar ddl -config <your geoserver data dir >/coverages/osm.postgis.xml -spatialTNPrefix tileosm -pyramids 2 -statementDelim ";" -srs 4326 -targetDir sqlscripts

Explanation of parameters

In the directory working/sqlscripts you will find the following files after execution:

createmeta.sql dropmeta.sql add_osm.sql remove_osm.sql

The generated scripts are only templates, it is up to you to modify them for better performance or other reasons. But do not break the relationship to the xml mapping fragment.

Executing the DDL scripts¶

For user “postgres”, databae “gis”, execute in the following order:

psql -U postgres -d gis  -f createmeta.sql
psql -U postgres -d gis  -f add_osm.sql

To clean your database, you can execute remove_osm.sql and dropmeta.sql after finishing the tutorial.

Importing the image data¶

The full documentation is here: http://docs.geotools.org/latest/userguide/library/coverage/jdbc/ddl.html

First, the jdbc jar file has to be in the lib/ext directory of your java runtime. In my case I had to copy postgresql-8.1-407.jdbc3.jar.

Change to the working directory and execute:

java -jar <your_geoserver_install_dir>/webapps/geoserver/WEB-INF/lib/gt-imagemosaic-jdbc-{version}.jar import  -config <your geoserver data dir>/coverages/osm.postgis.xml -spatialTNPrefix tileosm -tileTNPrefix tileosm -dir tiles -ext png

This statement imports your tiles including all pyramids into your database.

Configuring GeoServer¶

Start GeoServer and log in.Under Config ‣ WCS ‣ CoveragePlugins you should see

If there is no line starting with “ImageMosaicJDBC”, the gt-imagemosiac-jdbc-version.jar file is not in your WEB-INF/lib folder. Go to Config‣Data‣CoverageStores‣New and fill in the formular

Press New and fill in the formular

Press Submit.

Press Apply, then Save to save your changes.

Next select Config‣Data‣Coverages‣New and select “osm”.

Press New and you will enter the Coverage Editor. Press Submit, Apply and Save.

Under Welcome‣Demo‣Map Preview you will find a new layer “topp:osm”. Select it and see the results

If you think the image is stretched, you are right. The reason is that the original image is georeferenced with EPSG:900913, but there is no support for this CRS in postigs (at the time of this writing). So I used EPSG:4326. For the purpose of this tutorial, this is ok.

Conclusion¶

There are a lot of other configuration possibilities for specific databases. This tutorial shows a quick cookbook to demonstrate some of the features of this module. Follow the links to the full documentation to dig deeper, especially if you are concerned about performance and database design.

If there is something which is missing, proposals are welcome.